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Публикации

ПУБЛИКАЦИИ

2024

  1. Veselovsky VA, Boldyreva DI, Olekhnovich EI, Klimina KM, Babenko VV, Zakharevich NV, Larin AK, Morozov MD, Zoruk PY, Sergiev PV, Dontsova OA, Maev IV, Novik TS, Kotlobay AA, Lazarev VN and Lagarkova MA (2024) Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota. Front. Nutr. 11:1362529. doi: 10.3389/fnut.2024.1362529
  2. Zakharevich N.V., Morozov M.D., Kanaeva V.A., Filippov M.S., Zyubko T.I., Ivanov A.B., Ulyantsev V.I., Klimina K.M. and Olekhnovich E.I. Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy. Life Science Alliance Mar 2024, 7 (5) e202302480; DOI: 10.26508/lsa.202302480
  3. Nikitin, P., Sidorov, S., Liehr, T., Klimina, K., Al-Rikabi, A., Korchagin, V., Kolomiets, O., Arakelyan, M., & Spangenberg, V. (2024). Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis (Darevsky, 1966). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 1–12. https://doi.org/10.1002/jez.b.23244
  4. Larin A.K., Klimina K.M., Veselovsky V.A., Olekhnovich E.I., Morozov M.D., Boldyreva D.I., Yunes R.A., Manolov A.I., Fedorov D.E., Pavlenko A.V., Galeeva Y.S., Starikova E.V. and Ilina E.N. An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform. BMC Genom Data 25, 8 (2024). https://doi.org/10.1186/s12863-024-01192-3
  5. Zolotarenko, A.; Bruskin, S. IQGAP3 Is an Important Mediator of Skin Inflammatory Diseases. Int. J. Mol. Sci. 2024, 25, 4545. https://doi.org/10.3390/ijms25084545
  6. Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN. Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota. Biomedicines. 2024 May 1;12(5):996. doi: 10.3390/biomedicines12050996. PMID: 38790958; PMCID: PMC11118803.
  7. Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB. Bacteroides vesicles promote functional alterations in the gut microbiota composition. Microbiol Spectr. 2024 Nov 5;12(11):e0063624. doi: 10.1128/spectrum.00636-24. Epub 2024 Sep 30. PMID: 39345205; PMCID: PMC11537023.
  8. Chebotar VK, Gancheva MS, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP. Whole-genome sequence of Bacillus paralicheniformis strain R243 isolated from rice (Oryza sativa L.) roots. Microbiol Resour Announc. 2024 Nov 12;13(11):e0087924. doi: 10.1128/mra.00879-24. Epub 2024 Oct 24. PMID: 39445794; PMCID: PMC11555995.
  9. Polyakova, V.I., Krivonos, D.V., Klimina, K.M., Veselovsky, V.A., Orlov, A.V., Fedorov, D.E., Korneenko, E.V.,Penkin, L.N., Pavlenko, A.V., Ilina, E.N., Arshba, I. M. Age-Related Specificities of the Gut Microbiota Composition of Rhesus Macaques Kept in Captivity. Mol. Genet. Microbiol. Virol. 39, 249–258 (2024). https://doi.org/10.3103/S0891416824...00277
  10. Starikova EV, Galeeva YS, Fedorov DE, Korneenko EV, Speranskaya AS, Selezneva OV, Zoruk PY, Klimina KM, Veselovsky VA, Morozov MD, Boldyreva DI, Olekhnovich EI, Manolov AI, Pavlenko AV, Kozlov IE, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovsky AV, Tsaregorodtsev SV, Evdokimov VV, Bely PA, Maev IV, Govorun VM, Ilina EN. Oropharyngeal resistome remains stable during COVID-19 therapy, while fecal resistome shifts toward a less diverse resistotype. iScience. 2024 Nov 5;27(12):111319. doi: 10.1016/j.isci.2024.111319. PMID: 39640576; PMCID: PMC11617248.
  11. Ovchinnikova LA, Eliseev IE, Dzhelad SS, Simaniv TO, Klimina KM, Ivanova M, Ilina EN, Zakharova MN, Illarioshkin SN, Rubtsov YP, Gabibov AG and Lomakin YA (2024) High heterogeneity of cross-reactive immunoglobulins in multiple sclerosis presumes combining of B-cell epitopes for diagnostics: a case-control study. Front. Immunol. 15:1401156. doi: 10.3389/fimmu.2024.1401156
  12. Kornienko M, Bespiatykh D, Abdraimova N, Gorodnichev R, Gostev V, Boldyreva D, Selezneva O, Veselovsky V, Pobeguts O, Smirnov I, Arapidi G, Klimina K, Shitikov E. Multiomics analysis of Staphylococcus aureus ST239 strains resistant to virulent Herelleviridae phages. Sci Rep. 2024 Nov 26;14(1):29375. doi: 10.1038/s41598-024-80909-x. PMID: 39592862; PMCID: PMC11599779.
  13. Abdraimova NK, Shitikov EA, Bespiatykh DA, Gorodnichev RB, Klimina KM, Veselovsky VA, Boldyreva DI, Bogdanova AS, Klinov DV and Kornienko MA (2024) Response of Staphylococcus aureus to combination of virulent bacteriophage vB_SauM-515A1 and linezolid. Front. Microbiol. 15:1519312. doi: 10.3389/fmicb.2024.1519312
  14. Pinakhina D, Kasyanov E, Rukavishnikov G, Larin AK, Veselovsky VA, Rakitko A, Neznanov N, Kibitov A, Mazo G and Artomov M (2024) The effect size of rs521851 in the intron of MAGI2/S-SCAM on HADS-D scores correlates with EAT-26 scores for eating disorders risk. Front. Psychiatry 15:1416009. doi: 10.3389/fpsyt.2024.1416009

2023

  1. Frolova, S.G.; Vatlin, A.A.; Maslov, D.A.; Yusuf, B.; Buravchenko, G.I.; Bekker, O.B.; Klimina, K.M.; Smirnova, S.V.; Shnakhova, L.M.; Malyants, I.K.; et al. Novel Derivatives of Quinoxaline-2-carboxylic Acid 1,4-Dioxides as Antimycobacterial Agents: Mechanistic Studies and Therapeutic Potential. Pharmaceuticals 2023, 16, 1565. https://doi.org/10.3390/ ph16111565
  2. Shitikov E, Bespiatykh D. 2023.  A revised SNP-based barcoding scheme for typing Mycobacterium tuberculosis complex isolates. mSphere 8:e00169-23. https://doi.org/10.1128/msphere.00169-23
  3. Kornienko, M.; Bespiatykh, D.; Gorodnichev, R.; Abdraimova, N.; Shitikov, E. Transcriptional Landscapes of Herelleviridae Bacteriophages and Staphylococcus aureus during Phage Infection: An Overview. Viruses 2023, 15, 1427. https://doi.org/10.3390/v15071427
  4. Galeeva JS, Starikova EV, Fedorov DE, Manolov AI, Pavlenko AV, Konanov DN, Krivonos DV, Babenko VV, Klimina KM, Veselovsky VA, Morozov MD, Gafurov IR, Gaifullina RF, Govorun VM and Ilina EN (2023) Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients: a possible link with the disease course. Front. Microbiomes 2:1067019. doi: 10.3389/frmbi.2023.1067019
  5. Adasheva DA, Lebedeva OS, Goliusova DV, Postnikov AB, Teriakova MV, Kopylova IV, Lagarkova MA, Katrukha AG, Serebryanaya DV. PAPP-A-Specific IGFBP-4 Proteolysis in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes. Int J Mol Sci. 2023 May 8;24(9):8420. doi: 10.3390/ijms24098420. PMID: 37176126; PMCID: PMC10179360.
  6. Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN. Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy. mSystems. 2023 Apr 27;8(2):e0102322. doi: 10.1128/msystems.01023-22. Epub 2023 Feb 21. PMID: 36809182; PMCID: PMC10134792.

2022

  1. Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM. The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture. Microorganisms. 2022 Aug 21;10(8):1683. doi: 10.3390/microorganisms10081683.
  2. Nasaev, S.S., Kopeykina, A.S., Kuznetsova, K.G., Levitsky L.I., Moshkovskii S.A. Proteomic Analysis of Zebrafish Protein Recoding via mRNA Editing by ADAR Enzymes.  Biochemistry Moscow 87, 1301–1309 (2022). https://doi.org/10.1134/S0006297922110098

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