Главная » Научные исследования » Отдел биомедицины и геномики » Лаборатория геномных исследований и вычислительной биологии » Наши публикации
Лаборатория геномных исследований и вычислительной биологии

Наши публикации

  1. Shnaider, P.V.; Malyants, I.K.; Ivanova, O.M.; Gordeeva, V.S.; Svirina, E.A.; Zakharzhevskaya, N.B.; Shagaleeva, O.Y.; Selezneva, O.V.; Bogomazova, A.N.; Lukina, M.M.; et al. Establishment of Novel High-Grade Serous Ovarian Carcinoma Cell Line OVAR79. Int. J. Mol. Sci. 2024, 25, 13236. https://doi.org/10.3390/ijms252413236 Q1

  2. Pinakhina D, Kasyanov E, Rukavishnikov G, Larin AK, Veselovsky VA, Rakitko A, Neznanov N, Kibitov A, Mazo G and Artomov M (2024) The effect size of rs521851 in the intron of MAGI2/S-SCAM on HADS-D scores correlates with EAT-26 scores for eating disorders risk. Front. Psychiatry 15:1416009. doi: 10.3389/fpsyt.2024.1416009 Q1

  3. Ovchinnikova LA, Eliseev IE, Dzhelad SS, Simaniv TO, Klimina KM, Ivanova M, Ilina EN, Zakharova MN, Illarioshkin SN, Rubtsov YP, Gabibov AG and Lomakin YA (2024) High heterogeneity of cross-reactive immunoglobulins in multiple sclerosis presumes combining of B-cell epitopes for diagnostics: a case-control study. Front. Immunol. 15:1401156. doi: 10.3389/fimmu.2024.1401156 Q1

  4. Kornienko M, Bespiatykh D, Abdraimova N, Gorodnichev R, Gostev V, Boldyreva D, Selezneva O, Veselovsky V, Pobeguts O, Smirnov I, Arapidi G, Klimina K, Shitikov E. Multiomics analysis of Staphylococcus aureus ST239 strains resistant to virulent Herelleviridae phages. Sci Rep. 2024 Nov 26;14(1):29375. doi: 10.1038/s41598-024-80909-x. PMID: 39592862; PMCID: PMC11599779. Q1

  5. Klimina KM, Dyachkova MS, Veselovsky VA, Zakharevich NV, Strokach AA, Selezneva OV, Shitikov EA, Bespiatykh DA, Yunes RA, Poluektova EU, Odorskaya MV, Ostroukhova PS, Bruskin SA, Danilenko VN, Olekhnovich EI. Transcriptional Responses of Lacticaseibacillus rhamnosus to TNF?, IL-6, IL-8, and IL-10 Cytokines. Biology (Basel). 2024 Nov 15;13(11):931. doi: 10.3390/biology13110931. PMID: 39596886. Q1

  6. Starikova EV, Galeeva YS, Fedorov DE, Korneenko EV, Speranskaya AS, Selezneva OV, Zoruk PY, Klimina KM, Veselovsky VA, Morozov MD, Boldyreva DI, Olekhnovich EI, Manolov AI, Pavlenko AV, Kozlov IE, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovsky AV, Tsaregorodtsev SV, Evdokimov VV, Bely PA, Maev IV, Govorun VM, Ilina EN. Oropharyngeal resistome remains stable during COVID-19 therapy, while fecal resistome shifts toward a less diverse resistotype. iScience. 2024 Nov 5;27(12):111319. doi: 10.1016/j.isci.2024.111319. PMID: 39640576; PMCID: PMC11617248.Q1

  7. Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB. Bacteroides vesicles promote functional alterations in the gut microbiota composition. Microbiol Spectr. 2024 Nov 5;12(11):e0063624. doi: 10.1128/spectrum.00636-24. Epub 2024 Sep 30. PMID: 39345205; PMCID: PMC11537023. Q1

  8. Kudriavskii VV, Goncharov AO, Eremeev AV, Ruchko ES, Veselovsky VA, Klimina KM, Bogomazova AN, Lagarkova MA, Moshkovskii SA, Kliuchnikova AA. RNA Editing by ADAR Adenosine Deaminases in the Cell Models of CAG Repeat Expansion Diseases: Significant Effect of Differentiation from Stem Cells into Brain Organoids in the Absence of Substantial Influence of CAG Repeats on the Level of Editing. Biochemistry (Mosc). 2024 Aug;89(8):1474-1489. doi: 10.1134/S0006297924080078. PMID: 39245456.Q4

  9. Shender VO, Anufrieva KS, Shnaider PV, Arapidi GP, Pavlyukov MS, Ivanova OM, Malyants IK, Stepanov GA, Zhuravlev E, Ziganshin RH, Butenko IO, Bukato ON, Klimina KM, Veselovsky VA, Grigorieva TV, Malanin SY, Aleshikova OI, Slonov AV, Babaeva NA, Ashrafyan LA, Khomyakova E, Evtushenko EG, Lukina MM, Wang Z, Silantiev AS, Nushtaeva AA, Kharlampieva DD, Lazarev VN, Lashkin AI, Arzumanyan LK, Petrushanko IY, Makarov AA, Lebedeva OS, Bogomazova AN, Lagarkova MA, Govorun VM. Therapy-induced secretion of spliceosomal components mediates pro-survival crosstalk between ovarian cancer cells. Nat Commun. 2024 Jun 19;15(1):5237. doi: 10.1038/s41467-024-49512-6. PMID: 38898005; PMCID: PMC11187153. Q1

  10. Guilherme JPLF, Semenova EA, Kikuchi N, Homma H, Kozuma A, Saito M, Zempo H, Matsumoto S, Kobatake N, Nakazato K, Okamoto T, John G, Yusupov RA, Larin AK, Kulemin NA, Gazizov IM, Generozov EV, Ahmetov II. Identification of Genomic Predictors of Muscle Fiber Size. Cells. 2024 Jul 18;13(14):1212. doi: 10.3390/cells13141212. PMID: 39056794; PMCID: PMC11274365.Q1

  11. Kazan HH, Bulgay C, Zorba E, Dalip M, Ceylan HI, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Ahmetov II, Cerit M. Exploring the relationship between caffeine metabolism-related CYP1A2 rs762551 polymorphism and team sport athlete status and training adaptations. Mol Biol Rep. 2024 Jul 23;51(1):841. doi: 10.1007/s11033-024-09800-2. PMID: 39042267; PMCID: PMC11266271.Q2

  12. Kazan HH, Kasakolu A, Koncagul S, Ergun MA, John G, Sultanov RI, Zhelankin AV, Semenova EA, Yusupov RA, Kulemin NA, Larin AK, Generozov EV, Bulgay C, Ahmetov II. Association analysis of indel variants and gene expression identifies MDM4 as a novel locus for skeletal muscle hypertrophy and power athlete status. Exp Physiol. 2024 Jul 23. doi: 10.1113/EP091992. Epub ahead of print. PMID: 39041487.Q2

  13. Rahimi MR, Semenova EA, John G, Fallah F, Larin AK, Generozov EV, Ahmetov II. Effect of ADORA2A Gene Polymorphism and Acute Caffeine Supplementation on Hormonal Response to Resistance Exercise: A Double-Blind, Crossover, Placebo-Controlled Study. Nutrients. 2024 Jun 8;16(12):1803. doi: 10.3390/nu16121803. PMID: 38931158; PMCID: PMC11206868. Q1

  14. Pobeguts OV, Galaymina MA, Sikamov KV, Urazaeva DR, Avshalumov AS, Mikhailycheva MV, Babenko VV, Smirnov IP, Gorbachev AY. Unraveling the adaptive strategies of Mycoplasma hominis through proteogenomic profiling of clinical isolates. Front Cell Infect Microbiol. 2024 May 2;14:1398706. doi: 10.3389/fcimb.2024.1398706. PMID: 38756231; PMCID: PMC11096450. Q1

  15. Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN. Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota. Biomedicines. 2024 May 1;12(5):996. doi: 10.3390/biomedicines12050996. PMID: 38790958; PMCID: PMC11118803.Q1

  16. Veselovsky VA, Boldyreva DI, Olekhnovich EI, Klimina KM, Babenko VV, Zakharevich NV, Larin AK, Morozov MD, Zoruk PY, Sergiev PV, Dontsova OA, Maev IV, Novik TS, Kotlobay AA, Lazarev VN and Lagarkova MA (2024) Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota. Front. Nutr. 11:1362529. doi: 10.3389/fnut.2024.1362529 Q1

  17. Palkina KA, Karataeva TA, Perfilov MM, Fakhranurova LI, Markina NM, Somermeyer LG, Garcia-Perez E, Vazquez-Vilar M, Rodriguez-Rodriguez M, Vazquez-Vilriales V, Shakhova ES, Mitiouchkina T, Belozerova OA, Kovalchuk SI, Alekberova A, Malyshevskaia AK, Bugaeva EN, Guglya EB, Balakireva A, Sytov N, Bezlikhotnova A, Boldyreva DI, Babenko VV, Kondrashov FA, Choob VV, Orzaez D, Yampolsky IV, Mishin AS, Sarkisyan KS. A hybrid pathway for self-sustained luminescence. Sci Adv. 2024 Mar 8;10(10):eadk1992. doi: 10.1126/sciadv.adk1992. Epub 2024 Mar 8. PMID: 38457503; PMCID: PMC10923510. Q1

  18. Sultanov, R., Mulyukina, A., Zubkova, O.,  Fedoseeva, A., Bogomazova, A., Klimina K., Larin, A., Zatsepin, T., Prikazchikova, T., Lukina, M., Bogomiakova, M., Sharova, E., Generozov, E., Lagarkova, M. and Arapidi, G. TP63–TRIM29 axis regulates enhancer methylation and chromosomal instability in prostate cancer. Epigenetics & Chromatin 17, 6 (2024). https://doi.org/10.1186/s13072-024-00529-7 Q1

  19. Zakharevich N.V., Morozov M.D., Kanaeva V.A., Filippov M.S., Zyubko T.I., Ivanov A.B., Ulyantsev V.I., Klimina K.M. and Olekhnovich E.I. Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy. Life Science Alliance Mar 2024, 7 (5) e202302480; DOI: 10.26508/lsa.202302480 Q1

  20. Nikitin, P., Sidorov, S., Liehr, T., Klimina, K., Al-Rikabi, A., Korchagin, V., Kolomiets, O., Arakelyan, M., & Spangenberg, V. (2024). Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis (Darevsky, 1966). Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 1–12. https://doi.org/10.1002/jez.b.23244 Q1

  21.  Larin A.K.,  Klimina K.M., Veselovsky V.A., Olekhnovich E.I.,  Morozov M.D.,  Boldyreva D.I.,  Yunes R.A., Manolov A.I.,  Fedorov D.E.,  Pavlenko A.V.,  Galeeva Y.S.,  Starikova E.V. and Ilina E.N. An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform. BMC Genom Data 25, 8 (2024). https://doi.org/10.1186/s12863-024-01192-3 Q3

  22. Ekaterina S. Shakhova, Tatiana A. Karataeva, Nadezhda M. Markina, Tatiana Mitiouchkina, Kseniia A. Palkina, Maxim M. Perfilov, Monika G. Wood, Trish T. Hoang , Mary P. Hall , Liliia I. Fakhranurova , Anna E. Alekberova , Alena K. Malyshevskaia, Dmitry A. Gorbachev, Evgenia N. Bugaeva, Ludmila K. Pletneva, Vladislav V. Babenko, Daria I. Boldyreva, Andrey Y. Gorokhovatsky, Anastasia V. Balakireva, Feng Gao, Vladimir V. Choob, Lance P. Encell, Keith V. Wood, Ilia V. Yampolsky, Karen S. Sarkisyan & Alexander S. Mishin. An improved pathway for autonomous bioluminescence imaging in eukaryotes. Nat Methods (2024). https://doi.org/10.1038/s41592-023-02152-y Q1

  23. Muravyov, M.; Radchenko, D.; Tsupkina, M.; Babenko, V.; Panyushkina, A. Old Sulfidic Ore Tailing Dump: Ground Features, Mineralogy, Biodiversity—A Case Study from Sibay, Russia. Minerals 2024, 14, 23. https://doi.org/10.3390/min14010023 Q2

  24. Konanov DN, Babenko VV , Belova AM, Madan AG, Boldyreva DI , Glushenko OE, Butenko IO, Fedorov DE, Manolov AI, Krivonos DV, Lazarev VN, Govorun VM, Ilina EN. Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads. Bioinformatics . 2023 Nov 1;39(11):btad702. doi: 10.1093/bioinformatics/btad702.

  25. Pozdnyakov IR, Potapenko EV, Nassonova ES, Babenko VV , Boldyreva DI , Tcvetkova VS, Karpov SA. T o the Origin of Fungi: Analysis of MFS Transporters of First Assembled Aphelidium Genome Highlights Dissimilarity of Osmotrophic Abilities between Aphelida and Fungi. J Fungi (Basel). 2023 Oct 16;9(10):1021. doi: 10.3390/jof9101021. PMID: 37888277; PMCID: PMC10608142.

  26. Frolova SG, Vatlin AA, Maslov DA, Yusuf B, Buravchenko GI, Bekker OB, Klimina KM , Smirnova SV, Shnakhova LM, Malyants IK, Lashkin AI, Tian X, Alam MS, Zatonsky GV, Zhang T, Shchekotikhin AE, Danilenko VN. Novel Derivatives of Quinoxaline-2-carboxylic Acid 1,4-Dioxides as Antimycobacterial Agents: Mechanistic Studies and Therapeutic Potential. Pharmaceuticals (Basel). 2023 Nov 6;16(11):1565. doi: 10.3390/ph16111565. PMID: 38004430; PMCID: PMC10675252.

  27. Galeeva JS, Starikova EV, Fedorov DE, Manolov AI, Pavlenko AV, Konanov DN, Krivonos DV, Babenko VV, Klimina KM, Veselovsky VA, Morozov MD , Gafurov IR, Gaifullina RF, Govorun VM and Ilina EN ( 2023 ) Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients: a possible link with the disease course. Front. Microbiomes 2:1067019. doi: 10.3389/frmbi.2023.1067019.

  28. Besarab NV, Letarova MA, Babenko VV , Belalov IS, Golomidova AK, Kulikov EE, Lagonenko AL, Evtushenkov AN, Letarov AV. The metastable associations of bacteriophages and Erwinia amylovora. Arch Microbiol . 2023 May 2;205(5):214. doi: 10.1007/s00203-023-03550-8.

  29. Chernukha I, Vasilevskaya E, Klimina K , Yunes R, Kupaeva N, Tolmacheva G, Kibitkina A, Danilenko V, Karabanov S, and Fedulova L ( 2023 ) Effects of ultrasoundinduced stress on gut microbiota of mice , Veterinary World , 16(5):929–938.

  30. Demirci B, Bulgay C, Ceylan Hİ, Öztürk ME, Öztürk D, Kazan HH, Ergun MA, Cerit M, Semenova EA, Larin AK , Generozov EV, Ahmetov II, Cepicka L. Association of ACTN3 R577X Polymorphism with Elite Basketball Player Status and Training Responses. Genes (Basel). 2023 May 29;14(6):1190. doi: 10.3390/genes14061190.

  31. Lebedeva OS, Sharova EI, Grekhnev DA, Skorodumova LO, Kopylova IV, Vassina EM, Oshkolova A, Novikova IV, Krisanova AV, Olekhnovich EI , Vigont VA, Kaznacheyeva EV, Bogomazova AN, Lagarkova MA. An Efficient 2D Protocol for Differentiation of iPSCs into Mature Postmitotic Dopaminergic Neurons: Application for Modeling Parkinson's Disease. Int J Mol Sci. 2023 Apr 14;24(8):7297. doi: 10.3390/ijms24087297.

  32. Bulgay C, Kasakolu A, Kazan HH, Mijaica R, Zorba E, Akman O, Bayraktar I, Ekmekci R, Koncagul S, Ulucan K, Semenova EA, Larin AK , Kulemin NA, Generozov EV, Balint L, Badicu G, Ahmetov II, Ergun MA. Exome-Wide Association Study of Competitive Performance in Elite Athletes. Genes (Basel). 2023 Mar 6;14(3):660. doi: 10.3390/genes14030660.

  33. Rahimi MR, Semenova EA, Larin AK , Kulemin NA, Generozov EV, Łubkowska B, Ahmetov II, Golpasandi H. T he ADORA2A TT Genotype Is Associated with Anti-Inflammatory Effects of Caffeine in Response to Resistance Exercise and Habitual Coffee Intake . Nutrients . 2023 Mar 28;15(7):1634. doi: 10.3390/nu15071634.

  34. Gorodnichev RB, Kornienko MA, Malakhova MV, Bespiatykh DA, Manuvera VA, Selezneva OV, Veselovsky VA , Bagrov DV, Zaychikova MV, Osnach VA, Shabalina AV, Goloshchapov OV, Bespyatykh JA, Dolgova AS, Shitikov EA. Isolation and Characterization of the First Zobellviridae Family Bacteriophage Infecting Klebsiella pneumoniae. Int J Mol Sci. 2023 Feb 17;24(4):4038. doi: 10.3390/ijms24044038 .

  35. Olekhnovich EI , Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN. Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy. mSystems. 2023 Apr 27;8(2):e0102322. doi: 10.1128/msystems.01023-22. Epub 2023 Feb 21 .

  36. Mamaeva A, Lyapina I, Knyazev A, Golub N, Mollaev T, Chudinova E, Elansky S, Babenko VV, Veselovsky VA, Klimina KM , Gribova T, Kharlampieva D, Lazarev V, Fesenko I. RALF peptides modulate immune response in the moss Physcomitrium patens. Front Plant Sci . 2023 Jan 27;14:1077301. doi: 10.3389/fpls.2023.1077301.

  37.   Ahmetov II, Valeeva EV, Yerdenova MB, Datkhabayeva GK, Bouzid A, Bhamidimarri PM, Sharafetdinova LM, Egorova ES, Semenova EA, Gabdrakhmanova LJ, Yusupov RA, Larin AK , Kulemin NA, Generozov EV, Hamoudi R, Kustubayeva AM, Rees T. KIBRA Gene Variant Is Associated with Ability in Chess and Science. Genes (Basel). 2023 Jan 13;14(1):204. doi: 10.3390/genes14010204.

  38. Veselovsky VA , Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM . T he Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture. Microorganisms. 2022 Aug 21;10(8):1683. doi: 10.3390/microorganisms10081683. 

  39. Poluektova, E.U., Mavletova, D.A., Odorskaya, M.V.,  Marsova M.V., Klimina K.M. , KoshenkoT.A., Yunes R.A., Danilenko V.N.. Comparative Genomic, Transcriptomic, and Proteomic Analysis of the Limosilactobacillus fermentum U-21 Strain Promising for the Creation of a Pharmabiotic. Russ J Genet 58, 1079–1090 ( 2022 ). https://doi.org/10.1134/S1022795422090125

  40. Starikova EV, Galeeva JS, Andreev DN, Sokolov PS, Fedorov DE, Manolov AI, Pavlenko AV, Klimina KM, Veselovsky VA , Zaborovsky AV, Evdokimov VV, Andreev NG, Devkota MK, Fomenko AK, Khar'kovskii VA, Asadulin PO, Kucher SA, Cheremushkina AS, Yanushevich OO, Maev IV, Krikheli NI, Levchenko OV, Ilina EN, Govorun VM. [Composition of oropharyngeal microbiota in patients with COVID-19 of different pneumonia severity]. Ter Arkh. 2022 Oct 12;94(8):963-972. Russian. doi: 10.26442/00403660.2022.08.201780.

  41. Besarab NV, Letarov AV, Kulikov EE, Babenko VV , Belalov IS, Lagonenko AL, Golomidova AK, Evtushenkov AN. Two novel Erwinia amylovora bacteriophages, Loshitsa2 and Micant, isolated in Belarus . Arch Virol. 2022 Dec;167(12):2633-2642. doi: 10.1007/s00705-022-05601-9. Epub 2022 Oct 7.

  42. Semenova EA, Zempo H, Miyamoto-Mikami E, Kumagai H, Larin AK , Sultanov RI, Babalyan KA, Zhelankin AV, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Burniston J, Generozov EV, Fuku N, Ahmetov II. Genome-Wide Association Study Identifies CDKN1A as a Novel Locus Associated with Muscle Fiber Composition. Cells. 2022 Dec 2;11(23):3910. doi: 10.3390/cells11233910. 

  43. Bojarczuk A, Boulygina EA, Dzitkowska-Zabielska M, Łubkowska B, Leońska-Duniec A, Egorova ES, Semenova EA, Andryushchenko LB, Larin AK , Generozov EV, Cięszczyk P, Ahmetov II. Genome-Wide Association Study of Exercise-Induced Fat Loss Efficiency. Genes (Basel). 2022 Oct 29;13(11):1975. doi: 10.3390/genes13111975. 

  44. Galeeva J, Babenko V , Bakhtyev R, Baklaushev V, Balykova L, Bashkirov P, Bespyatykh J, Blagonravova A, Boldyreva D , Fedorov D, Gafurov I, Gaifullina R, Galova E, Gospodaryk A, Ilina E, Ivanov K, Kharlampieva D, Khromova P, Klimina K , Kolontarev K, Kolyshkina N, Koritsky A, Kuropatkin V, Lazarev V, Manolov A, Manuvera V, Matyushkina D, Morozov M , Moskaleva E, Musarova V, Ogarkov O, Orlova E, Pavlenko A, Petrova A, Pozhenko N, Pushkar D, Rumyantsev A, Rumyantsev S, Rumyantsev V, Rychkova L, Samoilov A, Shirokova I, Sinkov V, Solovieva S, Starikova E, Tikhonova P, Trifonova G, Troitsky A, Tulichev A, Udalov Y, Varizhuk A, Vasiliev A, Veselovsky V , Vereshchagin R, Volnukhin A, Yusubalieva G, Govorun V. 1 6S rRNA gene sequencing data of the upper respiratory tract microbiome in the SARS-CoV-2 infected patients. Data Brief. 2022 Feb;40:107770. doi: 10.1016/j.dib.2021.107770. Epub 2021 Dec 29. PMID: 34977286; PMCID: PMC8715627.

  45. Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK , Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N. Genetic profile of sports climbing athletes from three different ethnicities. Biol Sport. 2022 Oct;39(4):913-919. doi: 10.5114/biolsport.2022.109958. Epub 2021 Nov 10. 

  46. Moreland E, Borisov OV, Semenova EA, Larin AK , Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II. Polygenic Profile of Elite Strength Athletes. J Strength Cond Res. 2022 Sep 1;36(9):2509-2514. doi: 10.1519/JSC.0000000000003901. Epub 2020 Dec 3.

  47. Guilherme JPLF, Semenova EA, Borisov OV, Kostryukova ES, Vepkhvadze TF, Lysenko EA, Andryushchenko ON, Andryushchenko LB, Lednev EM, Larin AK , Bondareva EA, Generozov EV, Ahmetov II. The BDNF-Increasing Allele is Associated With Increased Proportion of Fast-Twitch Muscle Fibers, Handgrip Strength, and Power Athlete Status. J Strength Cond Res . 2022 Jul 1;36(7):1884-1889. doi: 10.1519/JSC.0000000000003756. Epub 2020 Dec 9. 

  48. Kuptsov N, Kornienko M, Bespiatykh D, Gorodnichev R, Klimina K , Veselovsky V , Shitikov E. Global Transcriptomic Response of Staphylococcus aureus to Virulent Bacteriophage Infection. Viruses . 2022 Mar 9;14(3):567. doi: 10.3390/v14030567.

  49. Shitikov E, Bespiatykh D, Malakhova M, Bespyatykh J, Bodoev I, Vedekhina T, Zaychikova M, Veselovsky V , Klimina K , Ilina E, Varizhuk A. Genome-Wide Transcriptional Response of Mycobacterium smegmatis MC2155 to G-Quadruplex Ligands BRACO-19 and TMPyP4 . Front Microbiol. 2022 Mar 4;13:817024. doi: 10.3389/fmicb.2022.817024.

  50. Konanov DN, Krivonos DV, Ilina EN, Babenko VV . BioCAT: Search for biosynthetic gene clusters producing nonribosomal peptides with known structure. Comput Struct Biotechnol J . 2022 Mar 4;20:1218-1226. doi: 10.1016/j.csbj.2022.02.013.

  51. Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK , Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N. Is COL1A1 Gene rs1107946 Polymorphism Associated with Sport Climbing Status and Flexibility? Genes (Basel). 2022 Feb 23;13(3):403. doi: 10.3390/genes13030403. PMID: 35327955.

  52. Guilherme JPLF, Semenova EA, Borisov OV, Larin AK , Moreland E, Generozov EV, Ahmetov II. Genomic predictors of testosterone levels are associated with muscle fiber size and strength. Eur J Appl Physiol . 2022 Feb;122(2):415-423. doi: 10.1007/s00421-021-04851-w. Epub 2021 Nov 18.

  53. Hall ECR, Semenova EA, Bondareva EA, Andryushchenko LB, Larin AK , Cięszczyk P, Generozov EV, Ahmetov II. Association of Genetically Predicted BCAA Levels with Muscle Fiber Size in Athletes Consuming Protein. Genes (Basel). 2022 Feb 23;13(3):397. doi: 10.3390/genes13030397.

  54. Baranova MN, Kudzhaev AM, Mokrushina YA, Babenko VV , Kornienko MA, Malakhova MV, Yudin VG, Rubtsova MP, Zalevsky A, Belozerova OA, Kovalchuk S, Zhuravlev YN, Ilina EN, Gabibov AG, Smirnov IV, Terekhov SS. Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint. Int J Mol Sci . 2022 Jan 21;23(3):1168. doi: 10.3390/ijms23031168.

  55. Makarieva TN, Romanenko LA, Mineev KS, Shubina LK, Guglya EB, Kalinovskaya NI, Ivanchina NV, Guzii AG, Belozerova OA, Kovalchuk SI, Popov RS, Denisenko VA, Mikhailov VV, Babenko VV , Ilina EN, Malakhova MV, Terekhov SS, Kudzhaev AM, Dmitrenok PS, Yampolsky IV, Stonik VA. Streptocinnamides A and B, Depsipeptides from Streptomyces sp. KMM 9044. Org Lett . 2022 Jun 30. doi: 10.1021/acs.orglett.2c01714.

  56. Fisunov GY, Pobeguts OV, Ladygina VG, Zubov AI, Galyamina MA, Kovalchuk SI, Ziganshin RK, Evsyutina DV, Matyushkina DS, Butenko IO, Bukato ON, Veselovsky VA , Semashko TA, Klimina KM , Levina GA, Barhatova OI, Rakovskaya IV. Thymidine utilisation pathway is a novel phenotypic switch of Mycoplasma hominis. J Med Microbiol . 2022 Jan;71(1):001468. doi: 10.1099/jmm.0.001468.

  57. Olekhnovich EI , Batotsyrenova EG, Yunes RA, Kashuro VA, Poluektova EU, Veselovsky VA , Ilina EN, Danilenko VN, Klimina KM . The effects of Levilactobacillus brevis on the physiological parameters and gut microbiota composition of rats subjected to desynchronosis. Microb Cell Fact . 2021 Dec 20;20(1):226. doi:10.1186/s12934-021-01716-x.

  58. Tikhonova P, Pavlova I, Isaakova E, Tsvetkov V, Bogomazova A, Vedekhina T, Luzhin AV, Sultanov R, Severov V, Klimina K , Kantidze OL, Pozmogova G, Lagarkova M, Varizhuk A. DNA G-Quadruplexes Contribute to CTCF Recruitment. Int J Mol Sci. 2021 Jun 30;22(13):7090. doi: 10.3390/ijms22137090.

  59. Vatlin AA, Shitikov EA, Shahbaaz M, Bespiatykh DA, Klimina KM , Christoffels A, Danilenko VN, Maslov DA. Transcriptomic Profile of Mycobacterium smegmatis in Response to an Imidazo[1,2-b][1,2,4,5]tetrazine Reveals Its Possible Impact on Iron Metabolism. Front Microbiol . 2021 Aug 4;12:724042. doi: 10.3389/fmicb.2021.724042.

  60. Gorodnichev RB, Volozhantsev NV, Krasilnikova VM, Bodoev IN, Kornienko MA, Kuptsov NS, Popova AV, Makarenko GI, Manolov AI, Slukin PV, Bespiatykh DA, Verevkin VV, Denisenko EA, Kulikov EE, Veselovsky VA , Malakhova MV, Dyatlov IA, Ilina EN, Shitikov EA. Novel Klebsiella pneumoniae K23-Specific Bacteriophages From Different Families: Similarity of Depolymerases and Their Therapeutic Potential. Front Microbiol . 2021 Aug 9;12:669618. doi: 10.3389/fmicb.2021.669618.

  61. Olekhnovich EI , Ivanov AB, Ulyantsev VI, Ilina EN. Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation. mSystems . 2021 Aug 31;6(4):e0081121. doi: 10.1128/mSystems.00811-21. Epub 2021 Aug 17.

  62. Balmasova IP, Olekhnovich EI , Klimina KM , Korenkova AA, Vakhitova MT, Babaev EA, Ovchinnikova LA, Lomakin YA, Smirnov IV, Tsarev VN, Mkrtumyan AM, Belogurov AA Jr, Gabibov AG, Ilina EN, Arutyunov SD. Drift of the Subgingival Periodontal Microbiome during Chronic Periodontitis in Type 2 Diabetes Mellitus Patients. Pathogens . 2021 Apr 22;10(5):504. doi: 10.3390/pathogens10050504.

  63. Letarov AV, Babenko VV , Kulikov EE. Free SARS-CoV-2 Spike Protein S1 Particles May Play a Role in the Pathogenesis of COVID-19 Infection. Biochemistry (Mosc). 2021 Mar;86(3):257-261. doi: 10.1134/S0006297921030032.

  64. Kikuchi N, Moreland E, Homma H, Semenova EA, Saito M, Larin AK , Kobatake N, Yusupov RA, Okamoto T, Nakazato K, Williams AG, Generozov EV, Ahmetov II. Genes and Weightlifting Performance. Genes (Basel). 2021 Dec 23;13(1):25. doi: 10.3390/genes13010025.

  65. Ginevičienė V, Jakaitienė A, Utkus A, Hall ECR, Semenova EA, Andryushchenko LB, Larin AK , Moreland E, Generozov EV, Ahmetov II. CKM Gene rs8111989 Polymorphism and Power Athlete Status. Genes . 2021 Sep 25;12(10):1499. doi: 10.3390/genes12101499.

  66. Guilherme JPLF, Semenova EA, Zempo H, Martins GL, Lancha Junior AH, Miyamoto-Mikami E, Kumagai H, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Borisov OV, Kostryukova ES, Kulemin NA, Larin AK , Generozov EV, Fuku N, Ahmetov II. Are Genome-Wide Association Study Identified Single-Nucleotide Polymorphisms Associated With Sprint Athletic Status? A Replication Study With 3 Different Cohorts. Int J Sports Physiol Perform . 2021 Apr 1;16(4):489-495. doi: 10.1123/ijspp.2019-1032.

  67. Guilherme JPLF, Bosnyák E, Semenova EA, Szmodis M, Griff A, Móra Á, Almási G, Trájer E, Udvardy A, Kostryukova ES, Borisov OV, Larin AK , Andryushchenko LB, Akimov EB, Generozov EV, Ahmetov II, Tóth M, Junior AHL. The MCT1 gene Glu490Asp polymorphism (rs1049434) is associated with endurance athlete status, lower blood lactate accumulation and higher maximum oxygen uptake. Biol Sport. 2021 Sep;38(3):465-474. doi: 10.5114/biolsport.2021.101638. Epub 2020 Dec 22.

  68. Frolova SG, Klimina KM , Kumar R, Vatlin AA, Salunke DB, Kendrekar P, Danilenko VN, Maslov DA. Identification of Mutations Conferring Tryptanthrin Resistance to Mycobacterium smegmatis. Antibiotics . 2020 Dec 23;10(1):6. doi: 10.3390/antibiotics10010006.

  69. Olekhnovich EI , Manolov AI, Pavlenko AV, Konanov DN, Fedorov DE, Tikhonova PO, Glushchenko OE, Ilina EN. Vliianie mikrobioma kishechnika na éffektivnost' protivoopukholevoĭ immunoterapii [Intestinal microbiom modulates the response to antitumor immunotherapy]. Biomed Khim . 2020 Jan;66(1):54-63. Russian. doi: 10.18097/PBMC20206601054.

  70. Kornienko M, Fisunov G, Bespiatykh D, Kuptsov N, Gorodnichev R, Klimina K , Kulikov E, Ilina E, Letarov A, Shitikov E. Transcriptional Landscape of Staphylococcus aureus Kayvirus Bacteriophage vB_SauM-515A1. Viruses . 2020 Nov 17;12(11):1320. doi: 10.3390/v12111320.

  71. Kornienko M, Kuptsov N, Gorodnichev R, Bespiatykh D, Guliaev A, Letarova M, Kulikov E, Veselovsky V , Malakhova M, Letarov A, Ilina E, Shitikov E. Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails. Sci Rep. 2020 Oct 29;10(1):18612. doi: 10.1038/s41598-020-75637-x.

  72. Bespyatykh J, Shitikov E, Bespiatykh D, Guliaev A, Klimina K , Veselovsky V , Arapidi G, Dogonadze M, Zhuravlev V, Ilina E, Govorun V. Metabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy. Pathogens . 2020 Feb 18;9(2):131. doi: 10.3390/pathogens9020131.

  73. Bespyatykh J, Bespiatykh D, Malakhova M, Klimina K , Bespyatykh A, Varizhuk A, Tevyashova A, Nikolenko T, Pozmogova G, Ilina E, Shitikov E. Aureolic Acid Group of Agents as Potential Antituberculosis Drugs. Antibiotics . 2020 Oct 19;9(10):715. doi: 10.3390/antibiotics9100715.

  74. Fedorov DE, Olekhnovich EI , Pavlenko AV, Klimina KM , Pokataev IA, Manolov AI, Konanov DN, Veselovsky VA , Ilina EN. I ntestinal microbiome as a predictor of the anti-PD-1 therapy success: metagenomic data analysis. Biomed Khim . 2020 Nov;66(6):502-507. Russian. doi: 10.18097/PBMC20206606502.

  75. Veselovsky VA , Dyachkova MS, Menyaylo EA, Polyaeva PS, Olekhnovich EI , Shitikov EA, Bespiatykh DA, Semashko TA, Kasianov AS, Ilina EN, Danilenko VN, Klimina KM . Gene Networks Underlying the Resistance of Bifidobacterium longum to Inflammatory Factors. Front Immunol. 2020 Nov 16;11:595877. doi: 10.3389/fimmu.2020.595877.

  76. Klimina KM , Voroshilova VN, Poluektova EU, Veselovsky VA , Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN. Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota. Toxins . 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388.

  77. Pudova EA, Krasnov GS, Nyushko KM, Kobelyatskaya AA, Savvateeva MV, Poloznikov AA, Dolotkazin DR, Klimina KM , Guvatova ZG, Simanovsky SA, Gladysh NS, Tokarev AT, Melnikova NV, Dmitriev AA, Alekseev BY, Kaprin AD, Kiseleva MV, Snezhkina AV, Kudryavtseva AV. miRNAs expression signature potentially associated with lymphatic dissemination in locally advanced prostate cancer. BMC Med Genomics . 2020 Sep 18;13(Suppl 8):129. doi: 10.1186/s12920-020-00788-9.

  78. Babenko VV , Millard A, Kulikov EE, Spasskaya NN, Letarova MA, Konanov DN, Belalov IS, Letarov AV. The ecogenomics of dsDNA bacteriophages in feces of stabled and feral horses. Comput Struct Biotechnol J. 2020 Nov 10;18:3457-3467. doi: 10.1016/j.csbj.2020.10.036.

  79. Babenko VV , Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN. Correction to: Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches. BMC Genomics . 2020 Jul 22;21(1):503. doi: 10.1186/s12864-020-06897-0. Erratum for: BMC Genomics. 2020 Apr 29;21(1):331.

  80. Babenko VV , Ziganshin RH, Weise C, Dyachenko I, Shaykhutdinova E, Murashev AN, Zhmak M, Starkov V, Hoang AN, Tsetlin V, Utkin Y. Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper. Biomedicines . 2020 Jul 28;8(8):249. doi: 10.3390/biomedicines8080249.

  81. Grafskaia E, Pavlova E, Babenko VV , Latsis I, Malakhova M, Lavrenova V, Bashkirov P, Belousov D, Klinov D, Lazarev V. The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides. Int J Mol Sci. 2020 Sep 27;21(19):7141. doi: 10.3390/ijms21197141

  82. Boldyreva DI , Babenko VV , Kanygina AV, Lunina ON, Letarova MA, Kostryukova ES, Savvichev AS, Gorlenko VM, Letarov AV. Genome Sequences of a Green-Colored Chlorobium phaeovibrioides Strain Containing Two Plasmids and a Closely Related Plasmid-Free Brown-Colored Strain. Microbiol Resour Announc . 2020 Jan 9;9(2):e01172-19. doi: 10.1128/MRA.01172-19.

  83. Babenko VV , Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN. Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches. BMC Genomics. 2020 Apr 29;21(1):331. doi: 10.1186/s12864-020-6748-0. Erratum in: BMC Genomics . 2020 Jul 22;21(1):503.

  84. Zhgun ES, Kislun YV, Kalachniuk TN, Veselovsky VA , Urban AS, Tikhonova PO, Pavlenko AV, Ilchenko GN, Ilina EN. Otsenka urovnia metabolitov v fekaliiakh patsientov s vospalitel'nymi zabolevaniiami kishechnika [Evaluation of metabolites levels in feces of patients with inflammatory bowel diseases]. Biomed Khim . 2020 May;66(3):233-240. Russian. doi: 10.18097/PBMC20206603233.

  85. Moreland E, Borisov OV, Semenova EA, Larin AK , Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II. P olygenic Profile of Elite Strength Athletes. J Strength Cond Res . 2020 Dec 3. doi: 10.1519/JSC.0000000000003901.

  86. Díaz Ramírez J, Álvarez-Herms J, Castañeda-Babarro A, Larruskain J, Ramírez de la Piscina X, Borisov OV, Semenova EA, Kostryukova ES, Kulemin NA, Andryushchenko ON, Larin AK , Andryushchenko LB, Generozov EV, Ahmetov II, Odriozola A. The GALNTL6 Gene rs558129 Polymorphism Is Associated With Power Performance. J Strength Cond Res . 2020 Nov;34(11):3031-3036. doi: 10.1519/JSC.0000000000003814.

  87. Boulygina EA, Borisov OV, Valeeva EV, Semenova EA, Kostryukova ES, Kulemin NA, Larin AK , Nabiullina RM, Mavliev FA, Akhatov AM, Andryushchenko ON, Andryushchenko LB, Zmijewski P, Generozov EV, Ahmetov II. Whole genome sequencing of elite athletes . Biol Sport . 2020 Sep;37(3):295-304. doi: 10.5114/biolsport.2020.96272. Epub 2020 Jun 10.

  88. Kusić D, Connolly J, Kainulainen H, Semenova EA, Borisov OV, Larin AK , Popov DV, Generozov EV, Ahmetov II, Britton SL, Koch LG, Burniston JG. Striated muscle-specific serine/threonine-protein kinase beta segregates with high versus low responsiveness to endurance exercise training. Physiol Genomics . 2020 Jan 1;52(1):35-46. doi: 10.1152/physiolgenomics.00103.2019. Epub 2019 Dec 2.

  89. Semenova EA, Miyamoto-Mikami E, Akimov EB, Al-Khelaifi F, Murakami H, Zempo H, Kostryukova ES, Kulemin NA, Larin AK , Borisov OV, Miyachi M, Popov DV, Boulygina EA, Takaragawa M, Kumagai H, Naito H, Pushkarev VP, Dyatlov DA, Lekontsev EV, Pushkareva YE, Andryushchenko LB, Elrayess MA, Generozov EV, Fuku N, Ahmetov II. The association of HFE gene H63D polymorphism with endurance athlete status and aerobic capacity: novel findings and a meta-analysis. Eur J Appl Physiol . 2020 Mar;120(3):665-673. doi: 10.1007/s00421-020-04306-8. Epub 2020 Jan 22.

  90. Al-Khelaifi F, Yousri NA, Diboun I, Semenova EA, Kostryukova ES, Kulemin NA, Borisov OV, Andryushchenko LB, Larin AK , Generozov EV, Miyamoto-Mikami E, Murakami H, Zempo H, Miyachi M, Takaragawa M, Kumagai H, Naito H, Fuku N, Abraham D, Hingorani A, Donati F, Botrè F, Georgakopoulos C, Suhre K, Ahmetov II, Albagha O, Elrayess MA. Genome-Wide Association Study Reveals a Novel Association Between MYBPC3 Gene Polymorphism, Endurance Athlete Status, Aerobic Capacity and Steroid Metabolism. Front Genet . 2020 Jun 16;11:595. doi: 10.3389/fgene.2020.00595.

  91. Turner DC, Gorski PP, Maasar MF, Seaborne RA, Baumert P, Brown AD, Kitchen MO, Erskine RM, Dos-Remedios I, Voisin S, Eynon N, Sultanov RI, Borisov OV, Larin AK , Semenova EA, Popov DV, Generozov EV, Stewart CE, Drust B, Owens DJ, Ahmetov II, Sharples AP. DNA methylation across the genome in aged human skeletal muscle tissue and muscle-derived cells: the role of HOX genes and physical activity. Sci Rep . 2020 Sep 21;10(1):15360. doi: 10.1038/s41598-020-72730-z.

  92. Bespyatykh J, Shitikov E, Guliaev A, Smolyakov A, Klimina K , Veselovsky V , Malakhova M, Arapidi G, Dogonadze M, Manicheva O, Bespiatykh D, Mokrousov I, Zhuravlev V, Ilina E, Govorun V. System OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster. Sci Rep . 2019 Dec 17;9(1):19255. doi: 10.1038/s41598-019-55896-z. 

  93. Klimina KM , Batotsyrenova EG, Yunes RA, Gilyaeva EH, Poluektova EU, Kostrova TA, Kudryavtseva AV, Odorskaya MV, Kashuro VA, Kasianov AS, Ivanov MB, Danilenko VN. The effects of desynchronosis on the gut microbiota composition and physiological parameters of rats. BMC Microbiol . 2019 Jul 12;19(1):160. doi: 10.1186/s12866-019-1535-2.

  94. Olekhnovich EI , Manolov AI, Samoilov AE, Prianichnikov NA, Malakhova MV, Tyakht AV, Pavlenko AV, Babenko VV , Larin AK , Kovarsky BA, Starikova EV, Glushchenko OE, Safina DD, Markelova MI, Boulygina EA, Khusnutdinova DR, Malanin SY, Abdulkhakov SR, Abdulkhakov RA, Grigoryeva TV, Kostryukova ES, Govorun VM, Ilina EN. Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy. Front Microbiol . 2019 Aug 27;10:1902. doi: 10.3389/fmicb.2019.01902.

  95. Goloshchapov OV, Olekhnovich EI , Sidorenko SV, Moiseev IS, Kucher MA, Fedorov DE, Pavlenko AV, Manolov AI, Gostev VV, Veselovsky VA , Klimina KM , Kostryukova ES, Bakin EA, Shvetcov AN, Gumbatova ED, Klementeva RV, Shcherbakov AA, Gorchakova MV, Egozcue JJ, Pawlowsky-Glahn V, Suvorova MA, Chukhlovin AB, Govorun VM, Ilina EN, Afanasyev BV. Long-term impact of fecal transplantation in healthy volunteers. BMC Microbiol . 2019 Dec 30;19(1):312. doi: 10.1186/s12866-019-1689-y.

  96. Glushchenko OE, Prianichnikov NA, Olekhnovich EI , Manolov AI, Tyakht AV, Starikova EV, Odintsova VE, Kostryukova ES, Ilina EI. V ERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota. Bioinformatics . 2019 Oct 1;35(19):3803-3811. doi: 10.1093/bioinformatics/btz154.

  97. Belova AM, Basmanov DV, Babenko VV , Podgorny OV, Mitko TV, Prusakov KA, Klinov DV, Lazarev VN. Two novel transcriptional reporter systems for monitoring Helicobacter pylori stress responses . Plasmid . 2019 Nov;106:102442. doi: 10.1016/j.plasmid.2019.102442.

  98. Golomidova AK, Kulikov EE, Babenko VV , Ivanov PA, Prokhorov NS, Letarov AV. Escherichia coli bacteriophage Gostya9, representing a new species within the genus T5virus. Arch Virol . 2019 Mar;164(3):879-884. doi: 10.1007/s00705-018-4113-2.

  99. Panyushkina AE, Babenko VV , Nikitina AS, Selezneva OV , Tsaplina IA, Letarova MA, Kostryukova ES, Letarov AV. Sulfobacillus thermotolerans: new insights into resistance and metabolic capacities of acidophilic chemolithotrophs. Sci Rep . 2019 Oct 21;9(1):15069. doi: 10.1038/s41598-019-51486-1.

  100. Grafskaia EN, Nadezhdin KD, Talyzina IA, Polina NF, Podgorny OV, Pavlova ER, Bashkirov PV, Kharlampieva DD, Bobrovsky PA, Latsis IA, Manuvera VA, Babenko VV , Trukhan VM, Arseniev AS, Klinov DV, Lazarev VN. Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens. Eur J Med Chem . 2019 Oct 15;180:143-153. doi: 10.1016/j.ejmech.2019.06.080.

  101. Knirel YA, Ivanov PA, Senchenkova SN, Naumenko OI, Ovchinnikova OO, Shashkov AS, Golomidova AK, Babenko VV , Kulikov EE, Letarov AV. Structure and gene cluster of the O antigen of Escherichia coli F17, a candidate for a new O-serogroup.   Int J Biol Macromol . 2019 Mar 1;124:389-395. doi: 10.1016/j.ijbiomac.2018.11.149. 

  102. Pickering C, Suraci B, Semenova EA, Boulygina EA, Kostryukova ES, Kulemin NA, Borisov OV, Khabibova SA, Larin AK , Pavlenko AV, Lyubaeva EV, Popov DV, Lysenko EA, Vepkhvadze TF, Lednev EM, Leońska-Duniec A, Pająk B, Chycki J, Moska W, Lulińska-Kuklik E, Dornowski M, Maszczyk A, Bradley B, Kana-Ah A, Cięszczyk P, Generozov EV, Ahmetov II. A Genome-Wide Association Study of Sprint Performance in Elite Youth Football Players. J Strength Cond Res . 2019 Sep;33(9):2344-2351. doi: 10.1519/JSC.0000000000003259.

  103. Grishina EE, Zmijewski P, Semenova EA, Cięszczyk P, Humińska-Lisowska K, Michałowska-Sawczyn M, Maculewicz E, Crewther B, Orysiak J, Kostryukova ES, Kulemin NA, Borisov OV, Khabibova SA, Larin AK , Pavlenko AV, Lyubaeva EV, Popov DV, Lysenko EA, Vepkhvadze TF, Lednev EM, Bondareva EA, Erskine RM, Generozov EV, Ahmetov II. Three DNA Polymorphisms Previously Identified as Markers for Handgrip Strength Are Associated With Strength in Weightlifters and Muscle Fiber Hypertrophy. J Strength Cond Res . 2019 Oct;33(10):2602-2607. doi: 10.1519/JSC.0000000000003304.

  104. Guilherme JPLF, Egorova ES, Semenova EA, Kostryukova ES, Kulemin NA, Borisov OV, Khabibova SA, Larin AK , Ospanova EA, Pavlenko AV, Lyubaeva EV, Popov DV, Lysenko EA, Vepkhvadze TF, Lednev EM, Govorun VM, Generozov EV, Ahmetov II, Lancha Junior AH. The A-allele of the FTO Gene rs9939609 Polymorphism Is Associated With Decreased Proportion of Slow Oxidative Muscle Fibers and Over-represented in Heavier Athletes. J Strength Cond Res . 2019 Mar;33(3):691-700. doi: 10.1519/JSC.0000000000003032.

  105. Seaborne RA, Hughes DC, Turner DC, Owens DJ, Baehr LM, Gorski P, Semenova EA, Borisov OV, Larin AK , Popov DV, Generozov EV, Sutherland H, Ahmetov II, Jarvis JC, Bodine SC, Sharples AP. UBR5 is a novel E3 ubiquitin ligase involved in skeletal muscle hypertrophy and recovery from atrophy. J Physiol . 2019 Jul;597(14):3727-3749. doi: 10.1113/JP278073.

  106. Pudova EA, Lukyanova EN, Nyushko KM, Mikhaylenko DS, Zaretsky AR, Snezhkina AV, Savvateeva MV, Kobelyatskaya AA, Melnikova NV, Volchenko NN, Efremov GD, Klimina KM , Belova AA, Kiseleva MV, Kaprin AD, Alekseev BY, Krasnov GS, Kudryavtseva AV. Differentially Expressed Genes Associated With Prognosis in Locally Advanced Lymph Node-Negative Prostate Cancer. Front Genet . 2019 Aug 9;10:730. doi: 10.3389/fgene.2019.00730.

  107. Klimina KM , Kasianov AS, Poluektova EU, Emelyanov KV, Voroshilova VN, Zakharevich NV, Kudryavtseva AV, Makeev VJ, Danilenko VN. Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes. PeerJ . 2019 Mar 4;7:e6554. doi: 10.7717/peerj.6554.

  108. Pudova EA, Kudryavtseva AV, Fedorova MS, Zaretsky AR, Shcherbo DS, Lukyanova EN, Popov AY, Sadritdinova AF, Abramov IS, Kharitonov SL, Krasnov GS, Klimina KM , Koroban NV, Volchenko NN, Nyushko KM, Melnikova NV, Chernichenko MA, Sidorov DV, Alekseev BY, Kiseleva MV, Kaprin AD, Dmitriev AA, Snezhkina AV. HK3 overexpression associated with epithelial-mesenchymal transition in colorectal cancer . BMC Genomics . 2018 Feb 9;19(Suppl 3):113. doi: 10.1186/s12864-018-4477-4.

  109. Olekhnovich EI , Vasilyev AT, Ulyantsev VI, Kostryukova ES, Tyakht AV. MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota. Bioinformatics. 2018 Feb 1;34(3):434-444. doi: 10.1093/bioinformatics/btx681. PMID: 29092015.

  110. Golomidova AK, Kulikov EE, Babenko VV , Kostryukova ES, Letarov AV. Complete Genome Sequence of Bacteriophage St11Ph5, Which Infects Uropathogenic Escherichia coli Strain up11. Genome Announc. 2018 Jan 11;6(2):e01371-17. doi: 10.1128/genomeA.01371-17. PMID: 29326207; PMCID: PMC5764931.

  111. Grafskaia EN, Polina NF, Babenko VV , Kharlampieva DD, Bobrovsky PA, Manuvera VA, Farafonova TE, Anikanov NA, Lazarev VN. Discovery of novel antimicrobial peptides: A transcriptomic study of the sea anemone Cnidopus japonicus. J Bioinform Comput Biol. 2018 Apr;16(2):1840006. doi: 10.1142/S0219720018400061. Epub 2018 Jan 3. PMID: 29361893.

  112. Savvichev AS, Babenko VV , Lunina ON, Letarova MA, Boldyreva DI , Veslopolova EF, Demidenko NA, Kokryatskaya NM, Krasnova ED, Gaisin VA, Kostryukova ES, Gorlenko VM, Letarov AV. Sharp water column stratification with an extremely dense microbial population in a small meromictic lake, Trekhtzvetnoe. Environ Microbiol. 2018 Oct;20(10):3784-3797. doi: 10.1111/1462-2920.14384. Epub 2018 Oct 5. PMID: 30117254.

  113. Zdorovenko EL, Wang Y, Shashkov AS, Chen T, Ovchinnikova OG, Liu B, Golomidova AK, Babenko VV , Letarov AV, Knirel YA. O-Antigens of Escherichia coli Strains O81 and HS3-104 Are Structurally and Genetically Related, Except O-Antigen Glucosylation in E. coli HS3-104. Biochemistry (Mosc). 2018 May;83(5):534-541. doi: 10.1134/S0006297918050061. PMID: 29738687.

  114. Yvert TP, Zempo H, Gabdrakhmanova LJ, Kikuchi N, Miyamoto-Mikami E, Murakami H, Naito H, Cieszczyk P, Leznicka K, Kostryukova ES, Alexeev DG, Egorova ES, Maciejewska-Skrendo A, Larin AK , Generozov EV, Kulemin NA, Ospanova EA, Pavlenko AV, Sawczuk M, Zmijewski P, Lulinska-Kuklik E, Govorun VM, Miyachi M, Ahmetov II, Fuku N. AGTR2 and sprint/power performance: a case-control replication study for rs11091046 polymorphism in two ethnicities. Biol Sport. 2018 Jun;35(2):105-109. doi: 10.5114/biolsport.2018.71599. Epub 2017 Nov 23. PMID: 30455538; PMCID: PMC6234304.

  115. Tyakht AV, Manolov AI, Kanygina AV, Ischenko DS, Kovarsky BA, Popenko AS, Pavlenko AV, Elizarova AV, Rakitina DV, Baikova JP, Ladygina VG, Kostryukova ES, Karpova IY, Semashko TA, Larin AK , Grigoryeva TV, Sinyagina MN, Malanin SY, Shcherbakov PL, Kharitonova AY, Khalif IL, Shapina MV, Maev IV, Andreev DN, Belousova EA, Buzunova YM, Alexeev DG, Govorun VM. Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses. BMC Genomics. 2018 Dec 27;19(1):968. doi: 10.1186/s12864-018-5306-5. PMID: 30587114; PMCID: PMC6307143.