Центр коллективного пользования
2026
1) Duplication of the Antistasin-Like Structure Resulted in a New Anticoagulant Protein in the Medicinal Leech
Brovina KA, Babenko VV, Manuvera VA, Bobrovsky PA, Kharlampieva DD, Lazarev VN.
Biomolecules. 2026 Jan 15;16(1):155. doi: 10.3390/biom16010155.
2) Genome and Transcriptome Sequencing of Oca (Oxalis tuberosa Molina) Reveals Photoperiod-Induced FT Homologs as Candidate Tuberigens
Gancheva M, Tkachenko A.
International Journal of Plant Biology. 2026; 17(2):11. https://doi.org/10.3390/ijpb17020011
3) Пролиферативный и транскриптомный ответ экспериментальной меланомы B16-F10 на модификацию микробиоты мыши пероральным введением Lacticaseibacillus rhamnosus K32 и Bifidobacterium adolescentis 150
Олехнович Е.И., Строкач А.А., Канаева В.А., Морозов М.Д., Веселовский В.А., Зорук П.Ю., Борисович И.А., Одорская М.В., Колдман С.Д., Колдман В.А., Климина К.М.
Гены и Клетки. - 2026. - Т. 1. - №1. doi: 10.17816/gc678874
4) MetaFX: feature extraction from whole-genome metagenomic sequencing data
Ivanov A, Popov V, Morozov M, Olekhnovich E, Ulyantsev V.
Bioinformatics. 2026 Feb 3;42(2):btag018. doi: 10.1093/bioinformatics/btag018.
5) Bacteriophages in gut metagenomes: from analysis to application
Zakharevich N, Strokach A, Shitikov E, Klimina K.
Virol J. 2026 Jan 22;23(1):40. doi: 10.1186/s12985-026-03069-6.
2025
1) Complete genome sequence of Levilactobacillus brevis 47f: a potential pharmabiotic strain
Koshenko T, Poluektova E, Yunes R, Marsova M, Danilenko V. 0.
Microbiol Resour Announc 0:e00123-25. https://doi.org/10.1128/mra.00123-25
2) Complete genome sequence of Gordonia rubripertincta 112, a promising degrader of aromatic and aliphatic compounds
Frantsuzova E, Kocharovskaya Y, Vetrova A, Delegan Y, Bogun A.
Microbiol Resour Announc. 2025 Jul 10;14(7):e0011425. doi: 10.1128/mra.00114-25. Epub 2025 May 28. PMID: 40434087; PMCID: PMC12243503.
3) Optimization of the HS-GC/MS technique for urine metabolomic profiling
Zakharzhevskaya NB, Kardonsky DA, Vorobyeva EA, Shagaleeva OY, Silantiev AS, Kazakova VD, Kashatnikova DA, Kalachnuk TN, Kolesnikova IV, Chaplin AV, Vanyushkina AA, Efimov BA.
Biol Methods Protoc. 2025 Nov 4;10(1):bpaf079. doi: 10.1093/biomethods/bpaf079.
4) Systematic analysis of spontaneous tandem genome amplification events in Yersinia pestis
Konanov DN, Liubimova ON, Kovrizhnikov AV, Sonets IV, Balykova AN, Lukina-Gronskaya AV, Speranskaya AS, Krivonos DV, Eroshenko GA, Ilina EN, Govorun VM, Kutyrev VV.
PLoS One. 2025 Dec 31;20(12):e0338460. doi: 10.1371/journal.pone.0338460.
5) Draft genome sequence of endophyte Bacillus atrophaeus strain Adn01S isolated from Agropyron desertorum (Fish.ex Link) Schuit stem
Chebotar VK, Gancheva MS, Khudyaeva MV, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP.
Microbiol Resour Announc. 2025 Dec 11;14(12):e0084425. doi: 10.1128/mra.00844-25. Epub 2025 Nov 4.
6) Recombinant RGD-Apoptins Decrease Human Melanoma Cell Viability
Shirokov D, Lepekhina D, Manuvera V, Bogomiakova M, Strokach A, Kazakova A, Arapidi G, Lazarev V.
Int J Mol Sci. 2025 Dec 13;26(24):12016. doi: 10.3390/ijms262412016.
7) Impact of DNA extraction techniques and sequencing approaches on microbial community profiling accuracy
Zoruk P, Morozov M, Veselovsky V, Strokach A, Babenko V and Klimina K
Front. Microbiomes 2025 4:1688681. doi: 10.3389/frmbi.2025.1688681
8) Mycobacteriophage Yasnaya_Polyana and its engineered lytic derivative: specificity of regulatory motifs and lytic potential
Shitikov E, Malakhova M, Kuznetsova S, Bespiatykh D, Gorodnichev R, Kiselev S, Kornienko M, Klimina K, Strokach A, German A, Lebedeva A, Fursov M, Vnukova A, Bagrov D, Kazyulina A, Shleeva M and Zaychikova M
Front. Microbiol. 2025 16:1713073. doi: 10.3389/fmicb.2025.1713073
9) The GNAO1-B Splice Variant Is the Predominant Isoform in Human Astrocytes and Localizes to Retraction Fibers and Migrasomes
Volovikov, E. A., Davidenko, A. V., Emets, E. V., Smirnova, A. S., Bogomazova, A. N., & Lagarkova, M. A.
Cells, 2025, 14(22), 1755. https://doi.org/10.3390/cells14221755
10) Bacterial Expression System with Deep Repression and Activation via CRISPR-Cas9
Manuvera VA, Bobrovsky PA, Kharlampieva DD, Grafskaia EN, Brovina KA, Serebrennikova MY, Lazarev VN.
CRISPR J. 2025 Jul 14. doi: 10.1177/25731599251358852. Epub ahead of print. PMID: 40659333.
11) Identification and Screening of Novel Antimicrobial Peptides from Medicinal Leech via Heterologous Expression in Escherichia coli.
Serebrennikova M, Grafskaia E, Kharlampieva D, Brovina K, Bobrovsky P, Alieva S, Manuvera V, Lazarev V.
Int J Mol Sci. 2025 Jul 18;26(14):6903. doi: 10.3390/ijms26146903. PMID: 40725149; PMCID: PMC12295236.
12) Development of New Antimicrobial Peptides by Directional Selection
Grafskaia, E.; Bobrovsky, P.; Kharlampieva, D.; Brovina, K.; Serebrennikova, M.; Alieva, S.; Selezneva, O.; Bessonova, E.; Lazarev, V.; Manuvera, V.
Antibiotics 2025, 14, 1120. https://doi.org/10.3390/antibiotics14111120
13) Comparative evaluation of sequencing platforms: Pacific Biosciences, Oxford Nanopore Technologies, and Illumina for 16S rRNA-based soil microbiome profiling
Veselovsky V, Romanov M, Zoruk P, Larin A, Babenko V, Morozov M, Strokach A, Zakharevich N, Khamidova S, Danilova A, Vatlin A, Pavshintsev V, Chenguang F, Tsybizov D, Mitkin N, Galanova O, Zakharenko A, Golokhvast K and Klimina K
Front. Microbiol. 2025 16:1633360. doi: 10.3389/fmicb.2025.1633360
14) Comparative evaluation of sequencing technologies and primer sets for mouse gut microbiota profiling
Strokach A, Zoruk P, Boldyreva D, Morozov M, Olekhnovich E, Veselovsky V, Babenko V, Selezneva O, Zakharevich N, Larin A, Koldman S, Koldman V, Odorskaya M, Yunes R, Pavlov V, Kudryavtseva A, Danilenko V and Klimina K
Front. Microbiol. 2025 16:1584359. doi: 10.3389/fmicb.2025.1584359
15) Draft genome sequence and analysis of endophyte Bacillus amyloliquefaciens strain Can02R isolated from the roots of Chenopodium album L.
Chebotar VK, Myskova AV, Khudyaeva M, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP.
Microbiol Resour Announc 2025 14:e01075-24. https://doi.org/10.1128/mra.01075-24
16) Spider venom peptides with unique fold selectively block Shaker-type potassium channels
Kuzmenkov AI, Iunusova VA, Lushpa VA, Deyev YA, Babenko VV, Osipov DV, Berkut AA, Tytgat J, Bocharov EV, Adams DJ, Finol-Urdaneta RK, Vassilevski AA.
Cell Mol Life Sci. 2025 Aug 8;82(1):300. doi: 10.1007/s00018-025-05778-7. PMID: 40778948; PMCID: PMC12334782.
17) Phage-antibiotic combinations against Klebsiella pneumoniae: impact of methodological approaches on effect evaluation
Gorodnichev RB, Krivulia AO, Kornienko MA, Abdraimova NK, Malakhova MV, Zaychikova MV, Bespiatykh DA, Manuvera VA, Shitikov EA.
Front Microbiol. 2025 Mar 12;16:1530819.
18) Method for Analyzing the Antimicrobial Activity of Peptides via the Escherichia coli Expression System
Grafskaia E.N., Kharlampievа D.D., Bobrovsky P.A., Serebrennikova M.Y., Lazarev V.N., Manuvera V. A.
Applied Biochemistry and Microbiology, 2025, Vol. 61, No. 1, pp. 76–83
19) Vic9 mycobacteriophage: the first subcluster B2 phage isolated in Russia
Zaychikova M, Malakhova M, Bespiatykh D, Kornienko M, Klimina K, Strokach A, Gorodnichev R, German A, Fursov M, Bagrov D, Vnukova A, Gracheva A, Kazyulina A, Shleeva M and Shitikov E
Front. Microbiol. 15:1513081.
20) From Genes to Disease: Reassessing LOXHD1 and AGBL1’s Contribution to Fuchs’ Dystrophy
Tsedilina, T.R.; Sharova, E.I.; Kanygina, A.V.; Malyugin, B.E.; Antonova, O.P.; Belodedova, A.V.; Tkachenko, I.S.; Gelyastanov, A.M.; Zolotarev, A.V.; Klokov, A.V.; et al.
Int. J. Mol. Sci. 2025, 26, 3343.
21) A Quinoxaline 1,4-Dioxide Activates DNA Repair Systems in Mycobacterium smegmatis: A Transcriptomic Study
Bekker, O.B.; Galanova, O.O.; Vatlin, A.A.; Frolova, S.G.; Shitikov, E.A.; Bespiatykh, D.A.; Klimina, K.M.; Veselovsky, V.A.; Ilyasov, R.A.; Smirnova, S.V.; et al.
Int. J. Mol. Sci. 2025, 26, 3689.
1) Duplication of the Antistasin-Like Structure Resulted in a New Anticoagulant Protein in the Medicinal Leech
Brovina KA, Babenko VV, Manuvera VA, Bobrovsky PA, Kharlampieva DD, Lazarev VN.
Biomolecules. 2026 Jan 15;16(1):155. doi: 10.3390/biom16010155.
2) Genome and Transcriptome Sequencing of Oca (Oxalis tuberosa Molina) Reveals Photoperiod-Induced FT Homologs as Candidate Tuberigens
Gancheva M, Tkachenko A.
International Journal of Plant Biology. 2026; 17(2):11. https://doi.org/10.3390/ijpb17020011
3) Пролиферативный и транскриптомный ответ экспериментальной меланомы B16-F10 на модификацию микробиоты мыши пероральным введением Lacticaseibacillus rhamnosus K32 и Bifidobacterium adolescentis 150
Олехнович Е.И., Строкач А.А., Канаева В.А., Морозов М.Д., Веселовский В.А., Зорук П.Ю., Борисович И.А., Одорская М.В., Колдман С.Д., Колдман В.А., Климина К.М.
Гены и Клетки. - 2026. - Т. 1. - №1. doi: 10.17816/gc678874
4) MetaFX: feature extraction from whole-genome metagenomic sequencing data
Ivanov A, Popov V, Morozov M, Olekhnovich E, Ulyantsev V.
Bioinformatics. 2026 Feb 3;42(2):btag018. doi: 10.1093/bioinformatics/btag018.
5) Bacteriophages in gut metagenomes: from analysis to application
Zakharevich N, Strokach A, Shitikov E, Klimina K.
Virol J. 2026 Jan 22;23(1):40. doi: 10.1186/s12985-026-03069-6.
2025
1) Complete genome sequence of Levilactobacillus brevis 47f: a potential pharmabiotic strain
Koshenko T, Poluektova E, Yunes R, Marsova M, Danilenko V. 0.
Microbiol Resour Announc 0:e00123-25. https://doi.org/10.1128/mra.00123-25
2) Complete genome sequence of Gordonia rubripertincta 112, a promising degrader of aromatic and aliphatic compounds
Frantsuzova E, Kocharovskaya Y, Vetrova A, Delegan Y, Bogun A.
Microbiol Resour Announc. 2025 Jul 10;14(7):e0011425. doi: 10.1128/mra.00114-25. Epub 2025 May 28. PMID: 40434087; PMCID: PMC12243503.
3) Optimization of the HS-GC/MS technique for urine metabolomic profiling
Zakharzhevskaya NB, Kardonsky DA, Vorobyeva EA, Shagaleeva OY, Silantiev AS, Kazakova VD, Kashatnikova DA, Kalachnuk TN, Kolesnikova IV, Chaplin AV, Vanyushkina AA, Efimov BA.
Biol Methods Protoc. 2025 Nov 4;10(1):bpaf079. doi: 10.1093/biomethods/bpaf079.
4) Systematic analysis of spontaneous tandem genome amplification events in Yersinia pestis
Konanov DN, Liubimova ON, Kovrizhnikov AV, Sonets IV, Balykova AN, Lukina-Gronskaya AV, Speranskaya AS, Krivonos DV, Eroshenko GA, Ilina EN, Govorun VM, Kutyrev VV.
PLoS One. 2025 Dec 31;20(12):e0338460. doi: 10.1371/journal.pone.0338460.
5) Draft genome sequence of endophyte Bacillus atrophaeus strain Adn01S isolated from Agropyron desertorum (Fish.ex Link) Schuit stem
Chebotar VK, Gancheva MS, Khudyaeva MV, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP.
Microbiol Resour Announc. 2025 Dec 11;14(12):e0084425. doi: 10.1128/mra.00844-25. Epub 2025 Nov 4.
6) Recombinant RGD-Apoptins Decrease Human Melanoma Cell Viability
Shirokov D, Lepekhina D, Manuvera V, Bogomiakova M, Strokach A, Kazakova A, Arapidi G, Lazarev V.
Int J Mol Sci. 2025 Dec 13;26(24):12016. doi: 10.3390/ijms262412016.
7) Impact of DNA extraction techniques and sequencing approaches on microbial community profiling accuracy
Zoruk P, Morozov M, Veselovsky V, Strokach A, Babenko V and Klimina K
Front. Microbiomes 2025 4:1688681. doi: 10.3389/frmbi.2025.1688681
8) Mycobacteriophage Yasnaya_Polyana and its engineered lytic derivative: specificity of regulatory motifs and lytic potential
Shitikov E, Malakhova M, Kuznetsova S, Bespiatykh D, Gorodnichev R, Kiselev S, Kornienko M, Klimina K, Strokach A, German A, Lebedeva A, Fursov M, Vnukova A, Bagrov D, Kazyulina A, Shleeva M and Zaychikova M
Front. Microbiol. 2025 16:1713073. doi: 10.3389/fmicb.2025.1713073
9) The GNAO1-B Splice Variant Is the Predominant Isoform in Human Astrocytes and Localizes to Retraction Fibers and Migrasomes
Volovikov, E. A., Davidenko, A. V., Emets, E. V., Smirnova, A. S., Bogomazova, A. N., & Lagarkova, M. A.
Cells, 2025, 14(22), 1755. https://doi.org/10.3390/cells14221755
10) Bacterial Expression System with Deep Repression and Activation via CRISPR-Cas9
Manuvera VA, Bobrovsky PA, Kharlampieva DD, Grafskaia EN, Brovina KA, Serebrennikova MY, Lazarev VN.
CRISPR J. 2025 Jul 14. doi: 10.1177/25731599251358852. Epub ahead of print. PMID: 40659333.
11) Identification and Screening of Novel Antimicrobial Peptides from Medicinal Leech via Heterologous Expression in Escherichia coli.
Serebrennikova M, Grafskaia E, Kharlampieva D, Brovina K, Bobrovsky P, Alieva S, Manuvera V, Lazarev V.
Int J Mol Sci. 2025 Jul 18;26(14):6903. doi: 10.3390/ijms26146903. PMID: 40725149; PMCID: PMC12295236.
12) Development of New Antimicrobial Peptides by Directional Selection
Grafskaia, E.; Bobrovsky, P.; Kharlampieva, D.; Brovina, K.; Serebrennikova, M.; Alieva, S.; Selezneva, O.; Bessonova, E.; Lazarev, V.; Manuvera, V.
Antibiotics 2025, 14, 1120. https://doi.org/10.3390/antibiotics14111120
13) Comparative evaluation of sequencing platforms: Pacific Biosciences, Oxford Nanopore Technologies, and Illumina for 16S rRNA-based soil microbiome profiling
Veselovsky V, Romanov M, Zoruk P, Larin A, Babenko V, Morozov M, Strokach A, Zakharevich N, Khamidova S, Danilova A, Vatlin A, Pavshintsev V, Chenguang F, Tsybizov D, Mitkin N, Galanova O, Zakharenko A, Golokhvast K and Klimina K
Front. Microbiol. 2025 16:1633360. doi: 10.3389/fmicb.2025.1633360
14) Comparative evaluation of sequencing technologies and primer sets for mouse gut microbiota profiling
Strokach A, Zoruk P, Boldyreva D, Morozov M, Olekhnovich E, Veselovsky V, Babenko V, Selezneva O, Zakharevich N, Larin A, Koldman S, Koldman V, Odorskaya M, Yunes R, Pavlov V, Kudryavtseva A, Danilenko V and Klimina K
Front. Microbiol. 2025 16:1584359. doi: 10.3389/fmicb.2025.1584359
15) Draft genome sequence and analysis of endophyte Bacillus amyloliquefaciens strain Can02R isolated from the roots of Chenopodium album L.
Chebotar VK, Myskova AV, Khudyaeva M, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP.
Microbiol Resour Announc 2025 14:e01075-24. https://doi.org/10.1128/mra.01075-24
16) Spider venom peptides with unique fold selectively block Shaker-type potassium channels
Kuzmenkov AI, Iunusova VA, Lushpa VA, Deyev YA, Babenko VV, Osipov DV, Berkut AA, Tytgat J, Bocharov EV, Adams DJ, Finol-Urdaneta RK, Vassilevski AA.
Cell Mol Life Sci. 2025 Aug 8;82(1):300. doi: 10.1007/s00018-025-05778-7. PMID: 40778948; PMCID: PMC12334782.
17) Phage-antibiotic combinations against Klebsiella pneumoniae: impact of methodological approaches on effect evaluation
Gorodnichev RB, Krivulia AO, Kornienko MA, Abdraimova NK, Malakhova MV, Zaychikova MV, Bespiatykh DA, Manuvera VA, Shitikov EA.
Front Microbiol. 2025 Mar 12;16:1530819.
18) Method for Analyzing the Antimicrobial Activity of Peptides via the Escherichia coli Expression System
Grafskaia E.N., Kharlampievа D.D., Bobrovsky P.A., Serebrennikova M.Y., Lazarev V.N., Manuvera V. A.
Applied Biochemistry and Microbiology, 2025, Vol. 61, No. 1, pp. 76–83
19) Vic9 mycobacteriophage: the first subcluster B2 phage isolated in Russia
Zaychikova M, Malakhova M, Bespiatykh D, Kornienko M, Klimina K, Strokach A, Gorodnichev R, German A, Fursov M, Bagrov D, Vnukova A, Gracheva A, Kazyulina A, Shleeva M and Shitikov E
Front. Microbiol. 15:1513081.
20) From Genes to Disease: Reassessing LOXHD1 and AGBL1’s Contribution to Fuchs’ Dystrophy
Tsedilina, T.R.; Sharova, E.I.; Kanygina, A.V.; Malyugin, B.E.; Antonova, O.P.; Belodedova, A.V.; Tkachenko, I.S.; Gelyastanov, A.M.; Zolotarev, A.V.; Klokov, A.V.; et al.
Int. J. Mol. Sci. 2025, 26, 3343.
21) A Quinoxaline 1,4-Dioxide Activates DNA Repair Systems in Mycobacterium smegmatis: A Transcriptomic Study
Bekker, O.B.; Galanova, O.O.; Vatlin, A.A.; Frolova, S.G.; Shitikov, E.A.; Bespiatykh, D.A.; Klimina, K.M.; Veselovsky, V.A.; Ilyasov, R.A.; Smirnova, S.V.; et al.
Int. J. Mol. Sci. 2025, 26, 3689.
2024
1) Протеомный и транскриптомный ответ скелетной мышцы человека на 12-недельную силовую тренировку
Леднев Е.М., Вепхвадзе Т.Ф., Смирнов И.П., Султанов Р.И., Желанкин А.В., Каныгина А.В., Попов Д.В., Генерозов Э.В.
Гены и клетки. 2024. Т. 19, № 2. С. 279–295.
2) Whole-genome sequence of Bacillus subtilis TR6 strain isolated from tomato (Solanum lycopersicum L.) roots
Chebotar VK, Gancheva MS, Chizhevskaya EP, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN.
Microbiol Resour Announc. 2024 Dec 12;13(12):e0090524.
3) Identification of Genomic Predictors of Muscle Fiber Size
Guilherme, J. P. L. F., Semenova, E. A., Kikuchi, N., Homma, H., Kozuma, A., Saito, M., Zempo, H., Matsumoto, S., Kobatake, N., Nakazato, K., Okamoto, T., John, G., Yusupov, R. A., Larin, A. K., Kulemin, N. A., Gazizov, I. M., Generozov, E. V., & Ahmetov, I. I. (2024).
Cells, 13(14), 1212.
4) Применение полуколичественной петлевой изотермической амплификации для оценки уровня экспрессии генов в культуре клеток Expi293
Бобровский П.А., Графская Е.Н., Харлампиева Д.Д., Фисунов Г.Ю., Манувера В.А., Лазарев В.Н.
Гены и клетки. 2024. Т. 19, № 4. С. 425–440.
5) An Escherichia coli Strain for Plasmid DNA Production with a Low Endotoxin Level
Kharlampieva, D.D., Bobrovsky, P.A., Grafskaia, E.N. et al.
Appl Biochem Microbiol 60, 1147–1152 (2024).
6) Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota
Veselovsky VA, Boldyreva DI, Olekhnovich EI, Klimina KM, Babenko VV, Zakharevich NV, Larin AK, Morozov MD, Zoruk PY, Sergiev PV, Dontsova OA, Maev IV, Novik TS, Kotlobay AA, Lazarev VN and Lagarkova MA (2024).
Front. Nutr. 11:1362529.
7) Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy
Zakharevich N.V., Morozov M.D., Kanaeva V.A., Filippov M.S., Zyubko T.I., Ivanov A.B., Ulyantsev V.I., Klimina K.M. and Olekhnovich E.I.
Life Science Alliance Mar 2024, 7 (5) e202302480
8) Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis (Darevsky, 1966)
Nikitin, P., Sidorov, S., Liehr, T., Klimina, K., Al-Rikabi, A., Korchagin, V., Kolomiets, O., Arakelyan, M., & Spangenberg, V. (2024).
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 1–12.
9) An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform
Larin A.K., Klimina K.M., Veselovsky V.A., Olekhnovich E.I., Morozov M.D., Boldyreva D.I., Yunes R.A., Manolov A.I., Fedorov D.E., Pavlenko A.V., Galeeva Y.S., Starikova E.V. and Ilina E.N.
BMC Genom Data 25, 8 (2024).
10) IQGAP3 Is an Important Mediator of Skin Inflammatory Diseases
Zolotarenko, A.; Bruskin, S.
Int. J. Mol. Sci. 2024, 25, 4545.
11) Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota. Biomedicines
Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN.
2024 May 1;12(5):996.
12) Bacteroides vesicles promote functional alterations in the gut microbiota composition
Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB.
Microbiol Spectr. 2024 Nov 5;12(11):e0063624.
13) Whole-genome sequence of Bacillus paralicheniformis strain R243 isolated from rice (Oryza sativa L.) roots
Chebotar VK, Gancheva MS, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP.
Microbiol Resour Announc. 2024 Nov 12;13(11):e0087924.
14) Age-Related Specificities of the Gut Microbiota Composition of Rhesus Macaques Kept in Captivity
Polyakova, V.I., Krivonos, D.V., Klimina, K.M., Veselovsky, V.A., Orlov, A.V., Fedorov, D.E., Korneenko, E.V.,Penkin, L.N., Pavlenko, A.V., Ilina, E.N., Arshba, I. M.
Mol. Genet. Microbiol. Virol. 39, 249–258 (2024).
15) Oropharyngeal resistome remains stable during COVID-19 therapy, while fecal resistome shifts toward a less diverse resistotype
Starikova EV, Galeeva YS, Fedorov DE, Korneenko EV, Speranskaya AS, Selezneva OV, Zoruk PY, Klimina KM, Veselovsky VA, Morozov MD, Boldyreva DI, Olekhnovich EI, Manolov AI, Pavlenko AV, Kozlov IE, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovsky AV, Tsaregorodtsev SV, Evdokimov VV, Bely PA, Maev IV, Govorun VM, Ilina EN.
iScience. 2024 Nov 5;27(12):111319.
16) High heterogeneity of cross-reactive immunoglobulins in multiple sclerosis presumes combining of B-cell epitopes for diagnostics: a case-control study
Ovchinnikova LA, Eliseev IE, Dzhelad SS, Simaniv TO, Klimina KM, Ivanova M, Ilina EN, Zakharova MN, Illarioshkin SN, Rubtsov YP, Gabibov AG and Lomakin YA (2024).
Front. Immunol. 15:1401156.
17) Multiomics analysis of Staphylococcus aureus ST239 strains resistant to virulent Herelleviridae phages
Kornienko M, Bespiatykh D, Abdraimova N, Gorodnichev R, Gostev V, Boldyreva D, Selezneva O, Veselovsky V, Pobeguts O, Smirnov I, Arapidi G, Klimina K, Shitikov E.
Sci Rep. 2024 Nov 26;14(1):29375.
18) Response of Staphylococcus aureus to combination of virulent bacteriophage vB_SauM-515A1 and linezolid
Abdraimova NK, Shitikov EA, Bespiatykh DA, Gorodnichev RB, Klimina KM, Veselovsky VA, Boldyreva DI, Bogdanova AS, Klinov DV and Kornienko MA (2024).
Front. Microbiol. 15:1519312.
19) The effect size of rs521851 in the intron of MAGI2/S-SCAM on HADS-D scores correlates with EAT-26 scores for eating disorders risk
Pinakhina D, Kasyanov E, Rukavishnikov G, Larin AK, Veselovsky VA, Rakitko A, Neznanov N, Kibitov A, Mazo G and Artomov M (2024).
Front. Psychiatry 15:1416009.
1) Протеомный и транскриптомный ответ скелетной мышцы человека на 12-недельную силовую тренировку
Леднев Е.М., Вепхвадзе Т.Ф., Смирнов И.П., Султанов Р.И., Желанкин А.В., Каныгина А.В., Попов Д.В., Генерозов Э.В.
Гены и клетки. 2024. Т. 19, № 2. С. 279–295.
2) Whole-genome sequence of Bacillus subtilis TR6 strain isolated from tomato (Solanum lycopersicum L.) roots
Chebotar VK, Gancheva MS, Chizhevskaya EP, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN.
Microbiol Resour Announc. 2024 Dec 12;13(12):e0090524.
3) Identification of Genomic Predictors of Muscle Fiber Size
Guilherme, J. P. L. F., Semenova, E. A., Kikuchi, N., Homma, H., Kozuma, A., Saito, M., Zempo, H., Matsumoto, S., Kobatake, N., Nakazato, K., Okamoto, T., John, G., Yusupov, R. A., Larin, A. K., Kulemin, N. A., Gazizov, I. M., Generozov, E. V., & Ahmetov, I. I. (2024).
Cells, 13(14), 1212.
4) Применение полуколичественной петлевой изотермической амплификации для оценки уровня экспрессии генов в культуре клеток Expi293
Бобровский П.А., Графская Е.Н., Харлампиева Д.Д., Фисунов Г.Ю., Манувера В.А., Лазарев В.Н.
Гены и клетки. 2024. Т. 19, № 4. С. 425–440.
5) An Escherichia coli Strain for Plasmid DNA Production with a Low Endotoxin Level
Kharlampieva, D.D., Bobrovsky, P.A., Grafskaia, E.N. et al.
Appl Biochem Microbiol 60, 1147–1152 (2024).
6) Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota
Veselovsky VA, Boldyreva DI, Olekhnovich EI, Klimina KM, Babenko VV, Zakharevich NV, Larin AK, Morozov MD, Zoruk PY, Sergiev PV, Dontsova OA, Maev IV, Novik TS, Kotlobay AA, Lazarev VN and Lagarkova MA (2024).
Front. Nutr. 11:1362529.
7) Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy
Zakharevich N.V., Morozov M.D., Kanaeva V.A., Filippov M.S., Zyubko T.I., Ivanov A.B., Ulyantsev V.I., Klimina K.M. and Olekhnovich E.I.
Life Science Alliance Mar 2024, 7 (5) e202302480
8) Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis (Darevsky, 1966)
Nikitin, P., Sidorov, S., Liehr, T., Klimina, K., Al-Rikabi, A., Korchagin, V., Kolomiets, O., Arakelyan, M., & Spangenberg, V. (2024).
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 1–12.
9) An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform
Larin A.K., Klimina K.M., Veselovsky V.A., Olekhnovich E.I., Morozov M.D., Boldyreva D.I., Yunes R.A., Manolov A.I., Fedorov D.E., Pavlenko A.V., Galeeva Y.S., Starikova E.V. and Ilina E.N.
BMC Genom Data 25, 8 (2024).
10) IQGAP3 Is an Important Mediator of Skin Inflammatory Diseases
Zolotarenko, A.; Bruskin, S.
Int. J. Mol. Sci. 2024, 25, 4545.
11) Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota. Biomedicines
Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN.
2024 May 1;12(5):996.
12) Bacteroides vesicles promote functional alterations in the gut microbiota composition
Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB.
Microbiol Spectr. 2024 Nov 5;12(11):e0063624.
13) Whole-genome sequence of Bacillus paralicheniformis strain R243 isolated from rice (Oryza sativa L.) roots
Chebotar VK, Gancheva MS, Keleinikova OV, Baganova ME, Zaplatkin AN, Pishchik VN, Chizhevskaya EP.
Microbiol Resour Announc. 2024 Nov 12;13(11):e0087924.
14) Age-Related Specificities of the Gut Microbiota Composition of Rhesus Macaques Kept in Captivity
Polyakova, V.I., Krivonos, D.V., Klimina, K.M., Veselovsky, V.A., Orlov, A.V., Fedorov, D.E., Korneenko, E.V.,Penkin, L.N., Pavlenko, A.V., Ilina, E.N., Arshba, I. M.
Mol. Genet. Microbiol. Virol. 39, 249–258 (2024).
15) Oropharyngeal resistome remains stable during COVID-19 therapy, while fecal resistome shifts toward a less diverse resistotype
Starikova EV, Galeeva YS, Fedorov DE, Korneenko EV, Speranskaya AS, Selezneva OV, Zoruk PY, Klimina KM, Veselovsky VA, Morozov MD, Boldyreva DI, Olekhnovich EI, Manolov AI, Pavlenko AV, Kozlov IE, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovsky AV, Tsaregorodtsev SV, Evdokimov VV, Bely PA, Maev IV, Govorun VM, Ilina EN.
iScience. 2024 Nov 5;27(12):111319.
16) High heterogeneity of cross-reactive immunoglobulins in multiple sclerosis presumes combining of B-cell epitopes for diagnostics: a case-control study
Ovchinnikova LA, Eliseev IE, Dzhelad SS, Simaniv TO, Klimina KM, Ivanova M, Ilina EN, Zakharova MN, Illarioshkin SN, Rubtsov YP, Gabibov AG and Lomakin YA (2024).
Front. Immunol. 15:1401156.
17) Multiomics analysis of Staphylococcus aureus ST239 strains resistant to virulent Herelleviridae phages
Kornienko M, Bespiatykh D, Abdraimova N, Gorodnichev R, Gostev V, Boldyreva D, Selezneva O, Veselovsky V, Pobeguts O, Smirnov I, Arapidi G, Klimina K, Shitikov E.
Sci Rep. 2024 Nov 26;14(1):29375.
18) Response of Staphylococcus aureus to combination of virulent bacteriophage vB_SauM-515A1 and linezolid
Abdraimova NK, Shitikov EA, Bespiatykh DA, Gorodnichev RB, Klimina KM, Veselovsky VA, Boldyreva DI, Bogdanova AS, Klinov DV and Kornienko MA (2024).
Front. Microbiol. 15:1519312.
19) The effect size of rs521851 in the intron of MAGI2/S-SCAM on HADS-D scores correlates with EAT-26 scores for eating disorders risk
Pinakhina D, Kasyanov E, Rukavishnikov G, Larin AK, Veselovsky VA, Rakitko A, Neznanov N, Kibitov A, Mazo G and Artomov M (2024).
Front. Psychiatry 15:1416009.
2023
1) Novel Derivatives of Quinoxaline-2-carboxylic Acid 1,4-Dioxides as Antimycobacterial Agents: Mechanistic Studies and Therapeutic Potential
Frolova, S.G.; Vatlin, A.A.; Maslov, D.A.; Yusuf, B.; Buravchenko, G.I.; Bekker, O.B.; Klimina, K.M.; Smirnova, S.V.; Shnakhova, L.M.; Malyants, I.K.; et al.
Pharmaceuticals 2023, 16, 1565.
2) A revised SNP-based barcoding scheme for typing Mycobacterium tuberculosis complex isolates
Shitikov E, Bespiatykh D. 2023.
mSphere 8:e00169-23.
3) Transcriptional Landscapes of Herelleviridae Bacteriophages and Staphylococcus aureus during Phage Infection: An Overview
Kornienko, M.; Bespiatykh, D.; Gorodnichev, R.; Abdraimova, N.; Shitikov, E.
Viruses 2023, 15, 1427.
4) Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients: a possible link with the disease course
Galeeva JS, Starikova EV, Fedorov DE, Manolov AI, Pavlenko AV, Konanov DN, Krivonos DV, Babenko VV, Klimina KM, Veselovsky VA, Morozov MD, Gafurov IR, Gaifullina RF, Govorun VM and Ilina EN (2023).
Front. Microbiomes 2:1067019.
5) PAPP-A-Specific IGFBP-4 Proteolysis in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Adasheva DA, Lebedeva OS, Goliusova DV, Postnikov AB, Teriakova MV, Kopylova IV, Lagarkova MA, Katrukha AG, Serebryanaya DV.
Int J Mol Sci. 2023 May 8;24(9):8420.
6) Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy
Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN.
mSystems. 2023 Apr 27;8(2):e0102322.
1) Novel Derivatives of Quinoxaline-2-carboxylic Acid 1,4-Dioxides as Antimycobacterial Agents: Mechanistic Studies and Therapeutic Potential
Frolova, S.G.; Vatlin, A.A.; Maslov, D.A.; Yusuf, B.; Buravchenko, G.I.; Bekker, O.B.; Klimina, K.M.; Smirnova, S.V.; Shnakhova, L.M.; Malyants, I.K.; et al.
Pharmaceuticals 2023, 16, 1565.
2) A revised SNP-based barcoding scheme for typing Mycobacterium tuberculosis complex isolates
Shitikov E, Bespiatykh D. 2023.
mSphere 8:e00169-23.
3) Transcriptional Landscapes of Herelleviridae Bacteriophages and Staphylococcus aureus during Phage Infection: An Overview
Kornienko, M.; Bespiatykh, D.; Gorodnichev, R.; Abdraimova, N.; Shitikov, E.
Viruses 2023, 15, 1427.
4) Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients: a possible link with the disease course
Galeeva JS, Starikova EV, Fedorov DE, Manolov AI, Pavlenko AV, Konanov DN, Krivonos DV, Babenko VV, Klimina KM, Veselovsky VA, Morozov MD, Gafurov IR, Gaifullina RF, Govorun VM and Ilina EN (2023).
Front. Microbiomes 2:1067019.
5) PAPP-A-Specific IGFBP-4 Proteolysis in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Adasheva DA, Lebedeva OS, Goliusova DV, Postnikov AB, Teriakova MV, Kopylova IV, Lagarkova MA, Katrukha AG, Serebryanaya DV.
Int J Mol Sci. 2023 May 8;24(9):8420.
6) Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy
Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN.
mSystems. 2023 Apr 27;8(2):e0102322.
2022
1) The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture
Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM.
Microorganisms. 2022 Aug 21;10(8):1683.
2) Proteomic Analysis of Zebrafish Protein Recoding via mRNA Editing by ADAR Enzymes
Nasaev, S.S., Kopeykina, A.S., Kuznetsova, K.G., Levitsky L.I., Moshkovskii S.A.
Biochemistry Moscow 87, 1301–1309 (2022).
1) The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture
Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM.
Microorganisms. 2022 Aug 21;10(8):1683.
2) Proteomic Analysis of Zebrafish Protein Recoding via mRNA Editing by ADAR Enzymes
Nasaev, S.S., Kopeykina, A.S., Kuznetsova, K.G., Levitsky L.I., Moshkovskii S.A.
Biochemistry Moscow 87, 1301–1309 (2022).